Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
5
single cell RNA-seq
4
Hi-C
2
Capture-C
1
snATAC-seq
Assay category
38
Transcription
20
DNA accessibility
15
DNA binding
4
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
July, 2018
5
March, 2020
3
October, 2022
2
August, 2021
1
August, 2022
Available data
54
bam
53
bigWig
39
tsv
14
bed narrowPeak
5
fastq
4
bedpe bed3+
4
hic
3
cool
Organism
85
Homo sapiens
Biosample type
76
cell line
8
primary cell
1
tissue
Organ
96
epithelium
85
pancreas
84
bone element
30
kidney
19
connective tissue
10
musculature of body
6
embryo
6
heart
3
brain
2
vasculature
1
adipose tissue
1
blood vessel
1
limb
1
liver
1
stomach
1
urinary bladder
1
vein
Project
78
AMP
4
T1D
3
HPAP
Genome assembly (visualization)
58
hg19
52
GRCh38
Lab
76
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
Audit category:
81
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
85 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
Hi-C
Capture-C
snATAC-seq
cell line
EndoC_BH1
33
19
15
6
1
2
primary cell
co-expressing pancreatic endocrine cell
2
pancreatic acinar cell
1
1
unclassified pancreatic endocrine cell
2
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
1
Download