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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
RNA microarray
5
single cell RNA-seq
2
ChIP-seq
2
pCHi-C
2
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
total RNA-seq
Assay category
6
Transcription
4
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
89
February, 2021
2
December, 2019
2
March, 2020
2
October, 2019
1
August, 2022
1
February, 2020
1
June, 2019
1
May, 2022
1
November, 2019
Available data
90
txt
10
tsv
5
csv
4
bam
4
bed narrowPeak
3
bigWig
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
100
Homo sapiens
Biosample type
in vitro differentiated cells
100
tissue
92
cell line
85
primary cell
1
stem cell
Organ
84
bone element
7
kidney
3
brain
2
musculature of body
1
adipose tissue
1
connective tissue
1
epithelium
1
limb
1
pancreas
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
5
hg19
4
GRCh38
Lab
100
AMP-T2D consortium
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
100 results
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RNA microarray
single cell RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
ATAC-seq
DNase-seq
total RNA-seq
tissue
bone element
84
kidney
5
adipose tissue(adipose white tissue)
1
bladder (urinary bladder)
1
brodmann area 43
1
cerebellum (Hemisphere)
1
gastric (mucosa of stomach)
1
insular gyrus
1
islet of Langerhans
1
kidney interstitium
1
muscle of leg
1
renal glomerulus
1
skeletal muscle tissue
1
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