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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
total RNA-seq
84
RNA microarray
34
ChIP-seq
30
ATAC-seq
8
pCHi-C
6
MeRIP-seq
5
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
1
STARR-seq
Assay category
34
DNA binding
Target of assay
16
histone
16
histone modification
11
transcription factor
10
narrow histone mark
7
control
7
recombinant protein
6
broad histone mark
1
RNA binding protein
Date released
13
November, 2019
12
October, 2019
4
December, 2017
4
May, 2021
1
March, 2020
Available data
34
bam
27
bed narrowPeak
27
bigWig
4
fastq
3
tagAlign
Organism
34
Homo sapiens
Biosample type
25
cell line
primary cell
7
in vitro differentiated cells
2
tissue
Organ
19
epithelium
15
pancreas
10
kidney
4
embryo
2
brain
Project
32
AMP
2
T1D
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
34
AMP-T2D consortium
Audit category:
34
inconsistent ontology term
28
inconsistent control
Audit category:
1
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
EndoC_BH1
15
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
in vitro differentiated cells
Hepatic endoderm
4
cardiomyocytes
3
tissue
brodmann area 43
1
insular gyrus
1
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