Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
10
ATAC-seq
7
ChIP-seq
4
Hi-C
pCHi-C
2
single cell RNA-seq
Assay category
91
Transcription
10
DNA accessibility
7
DNA binding
4
3D chromatin structure
Target of assay
3
transcription factor
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
68
May, 2021
18
February, 2021
6
October, 2019
5
February, 2023
5
November, 2019
4
December, 2017
4
March, 2020
2
December, 2019
Available data
101
bam
93
bigWig
89
tsv
13
bed narrowPeak
4
bedpe bed3+
4
fastq
4
hic
3
tagAlign
2
bed bed3+
1
bed bedgraph
1
txt
Organism
112
Homo sapiens
Biosample type
112
in vitro differentiated cells
90
cell line
89
tissue
53
primary cell
Organ
6
embryo
5
epithelium
4
connective tissue
Project
112
AMP
Genome assembly (visualization)
106
hg19
99
GRCh38
Lab
111
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
1
inconsistent control read length
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
112 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Hepatic endoderm
4
+ See 8 more…
See all biosamples
Download