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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
11
ATAC-seq
6
single cell RNA-seq
4
total RNA-seq
2
DNase-seq
1
RRBS
1
pCHi-C
Assay category
19
DNA binding
13
DNA accessibility
10
Transcription
1
DNA methylation
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
21
June, 2019
8
May, 2020
6
February, 2023
5
July, 2018
1
July, 2019
1
June, 2018
1
May, 2021
1
October, 2019
Available data
36
bam
32
bigWig
19
bed narrowPeak
18
bigBed narrowPeak
16
tsv
6
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
44
Homo sapiens
Biosample type
110
in vitro differentiated cells
91
tissue
44
primary cell
16
cell line
1
stem cell
Organ
13
connective tissue
epithelium
8
kidney
8
musculature of body
6
heart
5
pancreas
1
liver
1
vasculature
Project
39
AMP
5
T1D
Genome assembly (visualization)
34
hg19
29
GRCh38
Lab
39
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
44
inconsistent ontology term
27
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
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