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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
7
single cell RNA-seq
4
total RNA-seq
2
RRBS
1
pCHi-C
Assay category
25
DNA binding
DNA accessibility
11
Transcription
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
22
June, 2019
6
July, 2018
4
May, 2020
3
May, 2019
2
July, 2019
1
June, 2018
1
May, 2021
Available data
36
bam
31
bigWig
20
bed narrowPeak
20
bigBed narrowPeak
11
tsv
7
fastq
2
bed bedMethyl
2
bigBed bedMethyl
Organism
39
Homo sapiens
Biosample type
105
in vitro differentiated cells
89
tissue
73
cell line
39
primary cell
1
stem cell
Organ
12
connective tissue
8
epithelium
8
musculature of body
7
kidney
5
heart
5
pancreas
Project
34
AMP
5
T1D
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
34
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
39
inconsistent ontology term
4
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
pCHi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
epithelial cell of proximal tubule
3
1
kidney epithelial cell
3
naive B cel
2
1
central memory CD8-positive, alpha-beta T cell
2
co-expressing pancreatic endocrine cell
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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