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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
55
ChIP-seq
42
ATAC-seq
9
pCHi-C
6
MeRIP-seq
4
DNase-seq
2
Capture-C
2
RRBS
2
single cell RNA-seq
1
STARR-seq
Assay category
132
Transcription
55
DNA binding
46
DNA accessibility
2
DNA methylation
Target of assay
31
histone
31
histone modification
17
narrow histone mark
14
broad histone mark
14
transcription factor
13
control
7
recombinant protein
4
RNA binding protein
3
nucleotide modification
Date released
128
February, 2021
90
May, 2021
26
June, 2019
21
November, 2019
21
October, 2019
15
March, 2020
11
February, 2023
8
May, 2020
6
November, 2020
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
Available data
212
bam
192
bigWig
150
tsv
85
txt
63
bed narrowPeak
24
bigBed narrowPeak
fastq
7
bedpe bed3+
6
bed bed3+
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
337
Homo sapiens
Biosample type
107
in vitro differentiated cells
91
cell line
91
tissue
47
primary cell
1
stem cell
Organ
85
epithelium
84
bone element
75
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
heart
3
brain
2
embryo
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
328
AMP
9
T1D
Genome assembly (visualization)
200
hg19
187
GRCh38
Lab
324
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
337
inconsistent ontology term
11
audit script error
1
inconsistent replicate
files.file_type!
hic
fastq
BIOSAMPLE
ASSAY
337 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
pCHi-C
MeRIP-seq
DNase-seq
Capture-C
RRBS
single cell RNA-seq
STARR-seq
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
2
+ See 7 more…
cell line
EndoC_BH1
33
15
19
6
2
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
RCC 7860 VHL
1
+ See 1 more…
tissue
bone element
84
adipose tissue(adipose white tissue)
1
bladder (urinary bladder)
1
brodmann area 43
1
cerebellum (Hemisphere)
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
epithelial cell of proximal tubule
3
1
1
naive B cel
2
2
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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