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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
15
ChIP-seq
7
total RNA-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
Hi-C
Assay category
19
DNA accessibility
15
DNA binding
12
Transcription
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
July, 2018
5
March, 2020
2
August, 2021
Available data
28
bam
27
bigWig
14
bed narrowPeak
13
tsv
5
fastq
1
bedpe bed3+
1
hic
Organism
55
Homo sapiens
Biosample type
50
cell line
5
primary cell
Organ
65
epithelium
55
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
51
AMP
4
T1D
Genome assembly (visualization)
29
hg19
26
GRCh38
Lab
49
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
55
inconsistent ontology term
4
audit script error
month_released!
February, 2021
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
ChIP-seq
total RNA-seq
MeRIP-seq
single cell RNA-seq
Capture-C
Hi-C
cell line
EndoC_BH1
19
15
7
6
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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