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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
ATAC-seq
7
single cell RNA-seq
4
total RNA-seq
3
DNase-seq
2
RRBS
1
pCHi-C
Assay category
22
DNA binding
15
DNA accessibility
11
Transcription
2
DNA methylation
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
25
June, 2019
8
May, 2020
6
February, 2023
6
July, 2018
May, 2019
2
July, 2019
2
October, 2019
1
June, 2018
1
May, 2021
Available data
42
bam
36
bigWig
23
bed narrowPeak
21
bigBed narrowPeak
17
tsv
7
fastq
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
51
Homo sapiens
Biosample type
115
in vitro differentiated cells
93
cell line
91
tissue
51
primary cell
1
stem cell
Organ
13
connective tissue
8
musculature of body
7
epithelium
6
heart
5
kidney
5
pancreas
1
liver
1
vasculature
Project
46
AMP
5
T1D
Genome assembly (visualization)
40
hg19
34
GRCh38
Lab
46
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
51
inconsistent ontology term
31
audit script error
0
inconsistent replicate
month_released!
May, 2019
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
epithelial cell of proximal tubule
3
1
1
naive B cel
2
2
1
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