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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
total RNA-seq
16
ATAC-seq
4
ChIP-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
71
Transcription
16
DNA accessibility
4
DNA binding
Target of assay
3
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
17
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
73
bam
73
bigWig
71
tsv
4
bed narrowPeak
3
tagAlign
Organism
92
Homo sapiens
Biosample type
70
in vitro differentiated cells
21
cell line
1
primary cell
Organ
22
epithelium
21
pancreas
2
embryo
Project
90
AMP
2
T1D
Genome assembly (visualization)
73
GRCh38
73
hg19
Lab
91
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
92
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiomyocytes (cardiac muscle cell)
1
2
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
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cell line
EndoC_BH1
4
16
1
primary cell
naive B cel
1
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