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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
20
ATAC-seq
4
ChIP-seq
1
pCHi-C
Assay category
73
Transcription
20
DNA accessibility
4
DNA binding
Target of assay
3
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
17
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
81
bam
81
bigWig
73
tsv
4
bed narrowPeak
3
tagAlign
Organism
98
Homo sapiens
Biosample type
68
in vitro differentiated cells
21
cell line
9
primary cell
Organ
22
epithelium
21
pancreas
2
embryo
Project
92
AMP
6
T1D
Genome assembly (visualization)
81
hg19
77
GRCh38
Lab
93
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
98
inconsistent ontology term
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiomyocytes (cardiac muscle cell)
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
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cell line
EndoC_BH1
4
16
1
primary cell
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
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