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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
3
ATAC-seq
2
DNase-seq
2
total RNA-seq
1
RRBS
1
pCHi-C
Assay category
19
DNA binding
5
DNA accessibility
2
Transcription
1
DNA methylation
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
21
June, 2019
4
February, 2023
1
July, 2019
1
March, 2020
1
November, 2019
Available data
22
bam
19
bed narrowPeak
18
bigBed narrowPeak
18
bigWig
4
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
28
Homo sapiens
Biosample type
21
primary cell
4
in vitro differentiated cells
2
tissue
1
stem cell
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
28
AMP
Genome assembly (visualization)
22
hg19
19
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RRBS
pCHi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
in vitro differentiated cells
immature adipocyte
2
2
tissue
adipose tissue(adipose white tissue)
1
muscle of leg
1
stem cell
mesenchymal stem cell
1
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