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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
33
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
33
DNA binding
22
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
23
histone
23
histone modification
13
narrow histone mark
10
broad histone mark
10
control
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
22
May, 2021
16
November, 2019
13
June, 2019
6
November, 2020
5
March, 2020
4
December, 2017
3
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
October, 2019
Available data
72
bam
65
bigWig
36
tsv
30
bed narrowPeak
13
bigBed narrowPeak
5
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
100
Homo sapiens
Biosample type
76
cell line
18
primary cell
5
in vitro differentiated cells
1
tissue
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
96
AMP
4
T1D
Genome assembly (visualization)
69
hg19
65
GRCh38
Lab
94
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
100
inconsistent ontology term
6
audit script error
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
100 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
15
19
6
2
1
primary cell
skeletal muscle satellite cell
8
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
tissue
muscle of leg
1
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