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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
9
ChIP-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
Hi-C
Assay category
38
Transcription
19
DNA accessibility
9
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
10
November, 2019
6
November, 2020
5
July, 2018
5
March, 2020
2
August, 2021
Available data
48
bam
47
bigWig
39
tsv
8
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
75
Homo sapiens
Biosample type
70
cell line
5
primary cell
Organ
85
epithelium
84
bone element
75
pancreas
23
kidney
15
connective tissue
6
embryo
6
heart
5
musculature of body
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
71
AMP
4
T1D
Genome assembly (visualization)
49
hg19
46
GRCh38
Lab
69
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
75
inconsistent ontology term
4
audit script error
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
Capture-C
Hi-C
cell line
EndoC_BH1
33
19
9
6
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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