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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
20
ATAC-seq
19
ChIP-seq
3
MeRIP-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
21
DNA accessibility
19
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
16
histone
16
histone modification
10
narrow histone mark
control
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
22
May, 2021
14
November, 2019
5
March, 2020
3
June, 2019
3
November, 2020
2
August, 2021
2
December, 2017
2
May, 2019
1
July, 2018
1
July, 2019
1
October, 2019
Available data
57
bam
57
bigWig
36
tsv
22
bed narrowPeak
5
bigBed narrowPeak
3
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
82
Homo sapiens
Biosample type
71
cell line
8
primary cell
3
in vitro differentiated cells
Organ
84
bone element
82
epithelium
76
pancreas
18
kidney
17
connective tissue
8
musculature of body
5
heart
4
embryo
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
78
AMP
4
T1D
Genome assembly (visualization)
61
hg19
57
GRCh38
Lab
79
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
82
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
82 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
19
13
3
2
1
primary cell
epithelial cell of proximal tubule
2
1
1
kidney epithelial cell
2
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
2
intermediate endothelial cell
1
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