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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
snATAC-seq
7
single cell RNA-seq
2
RNA microarray
1
ATAC-seq
Assay category
30
DNA accessibility
7
Transcription
Date released
33
February, 2021
4
December, 2019
1
August, 2022
1
May, 2022
Available data
27
fastq
9
tsv
6
txt
5
csv
hic
3
bedpe bed3+
3
cool
1
bam
1
bed bed3
1
bed bed3+
1
bed narrowPeak
Organism
39
Homo sapiens
Biosample type
27
primary cell
9
tissue
2
in vitro differentiated cells
1
cell line
Organ
7
kidney
1
epithelium
1
liver
1
musculature of body
1
pancreas
Project
27
HPAP
12
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
27
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
348
inconsistent ontology term
38
audit script error
28
inconsistent control
1
inconsistent replicate
files.file_type!
hic
BIOSAMPLE
ASSAY
39 results
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snATAC-seq
single cell RNA-seq
RNA microarray
ATAC-seq
primary cell
Langerhans cell
27
tissue
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
HepG2
1
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