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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
single cell RNA-seq
2
RNA microarray
2
snATAC-seq
1
ATAC-seq
1
Hi-C
Assay category
7
Transcription
3
DNA accessibility
1
3D chromatin structure
Date released
6
February, 2021
4
December, 2019
1
August, 2022
1
May, 2022
1
October, 2019
Available data
9
tsv
6
txt
5
csv
1
bam
1
bed bed3
1
bed bed3+
1
bed narrowPeak
1
hic
Organism
13
Homo sapiens
Biosample type
9
tissue
2
in vitro differentiated cells
1
cell line
1
primary cell
Organ
7
kidney
2
epithelium
1
blood vessel
1
liver
1
musculature of body
1
pancreas
1
vasculature
1
vein
Project
13
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
30
Klaus Kaestner, Upenn
13
AMP-T2D consortium
Audit category:
340
inconsistent ontology term
28
inconsistent control
12
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
13 results
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single cell RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
Hi-C
tissue
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
HepG2
1
primary cell
endothelial cell of umbilical vein
1
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