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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
380
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
380
DNA binding
12
DNA accessibility
Target of assay
341
transcription factor
88
recombinant protein
61
RNA binding protein
34
histone
34
histone modification
24
chromatin remodeller
17
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
239
November, 2017
54
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
569
bam
510
bigWig
414
fastq
392
bed narrowPeak
343
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
392
Homo sapiens
Biosample type
962
tissue
392
cell line
149
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
296
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
390
AMP
2
T1D
Genome assembly (visualization)
388
hg19
353
GRCh38
Lab
378
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
19
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
392 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
295
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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