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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
Assay category
479
Transcription
173
DNA accessibility
156
DNA binding
53
DNA methylation
9
3D chromatin structure
Target of assay
103
histone
103
histone modification
56
broad histone mark
48
control
47
narrow histone mark
13
transcription factor
RNA binding protein
Date released
71
August, 2017
45
October, 2018
13
October, 2019
12
November, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
136
bam
99
bed narrowPeak
99
bigWig
86
fastq
53
bigBed narrowPeak
19
tagAlign
12
bed broadPeak
10
bed bed3+
Organism
149
Homo sapiens
Biosample type
100
tissue
27
cell line
26
primary cell
3
in vitro differentiated cells
Organ
483
liver
211
brain
156
pancreas
126
connective tissue
123
heart
100
epithelium
97
vasculature
95
blood vessel
66
limb
56
adipose tissue
50
blood
50
bodily fluid
49
kidney
39
musculature of body
35
nerve
33
artery
21
embryo
20
spleen
17
vein
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
152
AMP
4
T1D
Genome assembly (visualization)
101
hg19
95
GRCh38
Lab
156
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
39
body of pancreas
30
endocrine pancreas
16
pancreas
15
cell line
EndoC_BH1
14
Panc1
13
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
in vitro differentiated cells
pancreatic PP cell
3
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