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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
21
ChIP-seq
12
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
76
Transcription
21
DNA binding
12
DNA accessibility
Target of assay
11
histone
11
histone modification
7
control
7
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
150
February, 2021
13
February, 2018
12
December, 2017
8
August, 2021
8
February, 2023
3
May, 2021
1
January, 2018
Available data
101
bam
88
txt
87
bigWig
72
tsv
26
fastq
22
bed narrowPeak
4
bed bed3
3
bed bed3+
Organism
195
Homo sapiens
Biosample type
158
tissue
28
in vitro differentiated cells
8
cell line
1
primary cell
Organ
890
pancreas
775
liver
664
connective tissue
503
epithelium
476
adipose tissue
392
heart
353
kidney
278
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
194
AMP
1
T1D
Genome assembly (visualization)
99
hg19
95
GRCh38
1
hg18
Lab
194
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
195 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
4
17
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
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