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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1116
ChIP-seq
460
ATAC-seq
367
single cell RNA-seq
209
DNase-seq
87
RNA microarray
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1663
Transcription
1116
DNA binding
674
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
813
histone modification
812
histone
412
narrow histone mark
400
broad histone mark
222
control
86
transcription factor
37
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
566
February, 2021
340
May, 2020
309
August, 2017
276
October, 2019
246
May, 2021
227
August, 2021
218
June, 2019
181
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
41
September, 2018
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
19
October, 2017
15
May, 2023
11
September, 2017
10
November, 2020
9
April, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
March, 2023
Available data
2447
bam
2316
bigWig
1346
tsv
1243
bed narrowPeak
689
fastq
667
bigBed narrowPeak
334
tagAlign
260
bed broadPeak
227
bed bed3+
225
bigBed broadPeak
156
txt
132
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3703
Homo sapiens
Biosample type
2723
tissue
988
primary cell
649
cell line
388
in vitro differentiated cells
10
stem cell
Organ
786
pancreas
574
connective tissue
478
adipose tissue
400
epithelium
375
liver
329
kidney
326
heart
282
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
95
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3161
AMP
276
HPAP
217
T1D
47
KPMP
9
LungMap
1
ITG
Genome assembly (visualization)
2326
GRCh38
2313
hg19
Lab
2877
AMP-T2D consortium
276
Klaus Kaestner, Upenn
273
Kyle Gaulton, UCSD
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
145
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
3711 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
292
61
68
6
1
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
1
1
1
bone element
84
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primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
pancreatic beta cell
21
13
23
12
16
1
Langerhans cell
85
CD8-positive, alpha-beta T cell
4
33
2
1
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