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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
29
histone
29
histone modification
19
transcription factor
15
narrow histone mark
14
broad histone mark
8
chromatin remodeller
4
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
15
November, 2017
11
December, 2017
3
November, 2018
2
February, 2018
1
October, 2018
Available data
48
bam
48
bed narrowPeak
48
bigWig
48
fastq
25
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
10
bed bed3+
9
tagAlign
Organism
48
Homo sapiens
Biosample type
18
cell line
17
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
19
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
48
AMP
Genome assembly (visualization)
51
hg19
48
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
48
inconsistent control read length
4
inconsistent assembly
3
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2018
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
cell line
HepG2
18
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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