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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
115
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
115
DNA binding
18
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
84
May, 2021
44
August, 2017
38
December, 2017
31
February, 2018
30
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
260
bam
238
bigWig
128
bed narrowPeak
127
tsv
113
fastq
19
bed bed3+
18
tagAlign
15
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
260
Homo sapiens
Biosample type
1831
tissue
492
primary cell
432
cell line
260
in vitro differentiated cells
3
stem cell
Organ
49
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
260
AMP
Genome assembly (visualization)
292
hg19
260
GRCh38
4
hg18
Lab
260
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2018
BIOSAMPLE
ASSAY
260 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
43
1
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
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