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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
355
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
282
transcription factor
81
recombinant protein
69
histone modification
68
histone
50
RNA binding protein
40
narrow histone mark
28
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
214
November, 2017
162
May, 2020
50
December, 2017
50
November, 2018
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
526
bam
523
bigWig
362
bed narrowPeak
338
fastq
321
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
526
Homo sapiens
Biosample type
263
cell line
238
tissue
14
in vitro differentiated cells
11
primary cell
Organ
581
pancreas
549
connective tissue
526
liver
412
adipose tissue
273
epithelium
266
heart
214
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
53
musculature of body
31
nerve
29
embryo
27
blood
27
bodily fluid
18
ureter
13
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
526
AMP
Genome assembly (visualization)
613
hg19
526
GRCh38
Lab
526
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
19
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2018
BIOSAMPLE
ASSAY
526 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
256
5
1
1
tissue
liver
75
147
2
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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