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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
112
DNA binding
89
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
87
histone modification
86
histone
44
broad histone mark
41
narrow histone mark
23
transcription factor
6
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
277
November, 2017
276
May, 2021
210
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
77
December, 2017
77
November, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
40
September, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
12
May, 2023
11
October, 2017
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
210
bam
210
fastq
208
bigWig
117
bed narrowPeak
89
tsv
38
bigBed narrowPeak
19
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
204
Homo sapiens
Biosample type
136
tissue
44
in vitro differentiated cells
30
primary cell
Organ
130
pancreas
48
connective tissue
19
liver
17
epithelium
4
adipose tissue
Project
210
AMP
Genome assembly (visualization)
237
hg19
210
GRCh38
Lab
210
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
11
89
1
liver
18
pancreas
12
adipose tissue
1
2
right lobe of liver
1
+ See 1 more…
in vitro differentiated cells
adipocyte
43
1
primary cell
skeletal muscle myoblast
13
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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