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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
185
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
109
histone
109
histone modification
56
broad histone mark
52
narrow histone mark
41
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
64
May, 2021
63
August, 2017
42
August, 2021
39
February, 2018
38
December, 2017
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
184
bam
161
bigWig
131
fastq
119
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
273
Homo sapiens
Biosample type
2620
tissue
990
primary cell
557
cell line
273
in vitro differentiated cells
9
stem cell
Organ
88
connective tissue
22
embryo
19
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
273
AMP
Genome assembly (visualization)
184
hg19
161
GRCh38
4
hg18
Lab
220
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
62
5
8
1
1
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
17
4
1
hepatocyte
15
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