Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
47
total RNA-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
Assay category
185
DNA binding
47
Transcription
DNA accessibility
Target of assay
109
histone
109
histone modification
56
broad histone mark
52
narrow histone mark
41
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
62
August, 2017
59
May, 2021
39
February, 2018
38
December, 2017
30
August, 2021
4
February, 2021
4
January, 2018
2
February, 2023
1
August, 2018
1
March, 2020
Available data
173
bam
149
bigWig
130
fastq
105
bed narrowPeak
41
tsv
37
tagAlign
21
bed bed3+
14
bigBed narrowPeak
1
bedpe bed3+
Organism
240
Homo sapiens
Biosample type
2192
tissue
717
primary cell
545
cell line
240
in vitro differentiated cells
9
stem cell
Organ
72
connective tissue
22
embryo
19
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
240
AMP
Genome assembly (visualization)
151
hg19
150
GRCh38
4
hg18
Lab
196
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
240 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
62
5
1
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
17
4
1
hepatocyte
15
+ See 16 more…
See all biosamples
Download