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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1036
total RNA-seq
839
ChIP-seq
259
ATAC-seq
177
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1226
Transcription
839
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
583
histone modification
582
histone
303
narrow histone mark
279
broad histone mark
187
control
71
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
262
August, 2017
240
October, 2019
229
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
39
November, 2019
38
March, 2020
26
November, 2018
24
February, 2020
19
April, 2020
19
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1878
bam
1704
bigWig
1073
tsv
936
bed narrowPeak
557
bigBed narrowPeak
351
fastq
234
tagAlign
210
bed broadPeak
190
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2611
Homo sapiens
Biosample type
2620
tissue
990
primary cell
557
cell line
273
in vitro differentiated cells
9
stem cell
Organ
534
connective tissue
495
pancreas
475
adipose tissue
361
liver
299
kidney
273
heart
258
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2523
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1790
GRCh38
1726
hg19
Lab
2308
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
2620 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
298
61
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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