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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
176
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
374
DNA binding
183
DNA accessibility
Target of assay
309
histone
309
histone modification
202
broad histone mark
107
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
93
May, 2019
64
April, 2019
57
November, 2017
47
October, 2019
45
October, 2018
36
December, 2017
22
August, 2017
17
November, 2018
6
January, 2019
3
December, 2018
3
October, 2017
2
July, 2019
Available data
1878
bam
1744
bigWig
1073
tsv
976
bed narrowPeak
557
bigBed narrowPeak
351
fastq
234
tagAlign
210
bed broadPeak
190
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
551
Homo sapiens
Biosample type
557
tissue
343
cell line
86
primary cell
17
in vitro differentiated cells
Organ
113
brain
88
heart
87
kidney
83
limb
62
blood vessel
62
pancreas
62
vasculature
49
liver
37
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
557
AMP
Genome assembly (visualization)
551
GRCh38
489
hg19
Lab
557
AMP-T2D consortium
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
557 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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