Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
212
DNA binding
37
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
181
histone
181
histone modification
114
narrow histone mark
67
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
12
October, 2017
11
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
238
bam
217
bigWig
198
bed narrowPeak
124
bigBed narrowPeak
114
tagAlign
45
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
279
Homo sapiens
Biosample type
258
tissue
21
primary cell
Organ
811
pancreas
777
liver
648
connective tissue
478
adipose tissue
412
epithelium
387
heart
331
kidney
279
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
30
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
279
AMP
Genome assembly (visualization)
212
GRCh38
159
hg19
Lab
279
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
279 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download