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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
367
single cell RNA-seq
18
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1590
DNA binding
789
DNA accessibility
389
Transcription
97
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
Date released
106
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
21
July, 2019
18
February, 2021
9
April, 2020
4
March, 2023
3
August, 2018
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
227
tsv
134
fastq
124
bam
124
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
385
Homo sapiens
Biosample type
196
tissue
189
primary cell
2
cell line
in vitro differentiated cells
2
stem cell
Organ
94
heart
82
pancreas
70
epithelium
65
kidney
9
lung
7
brain
7
connective tissue
6
blood vessel
6
vasculature
4
liver
3
adipose tissue
3
musculature of body
2
artery
Project
244
AMP
85
HPAP
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
124
GRCh38
124
hg19
Lab
233
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
5
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
in vitro differentiated cells
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
389 results
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single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 25 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 16 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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