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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
337
ChIP-seq
52
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
337
DNA binding
52
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
301
transcription factor
88
recombinant protein
57
RNA binding protein
31
histone
31
histone modification
24
chromatin remodeller
16
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
214
November, 2017
55
November, 2018
28
February, 2021
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
394
bam
393
bigWig
341
bed narrowPeak
318
bigBed narrowPeak
316
fastq
52
tsv
45
bed broadPeak
45
bigBed broadPeak
10
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
395
Homo sapiens
Biosample type
1643
tissue
482
primary cell
395
cell line
259
in vitro differentiated cells
3
stem cell
Organ
263
liver
64
artery
64
blood vessel
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
391
AMP
4
T1D
Genome assembly (visualization)
454
hg19
395
GRCh38
Lab
395
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
18
inconsistent control read length
2
inconsistent control run_type
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
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BIOSAMPLE
ASSAY
395 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
256
5
1
1
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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