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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
Assay category
37
DNA binding
Target of assay
349
transcription factor
88
recombinant protein
83
control
63
RNA binding protein
37
histone
37
histone modification
24
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
14
November, 2017
10
November, 2019
7
October, 2019
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
36
bigWig
34
bam
34
bed narrowPeak
19
bigBed narrowPeak
15
fastq
14
bed broadPeak
14
bigBed broadPeak
11
tagAlign
Organism
37
Homo sapiens
Biosample type
584
tissue
193
primary cell
111
in vitro differentiated cells
37
cell line
2
stem cell
Organ
19
pancreas
17
liver
12
epithelium
1
blood
1
bodily fluid
Project
35
AMP
2
T1D
Genome assembly (visualization)
36
hg19
31
GRCh38
Lab
34
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
cell line
HepG2
17
EndoC_BH1
12
Panc1
7
GM12878
1
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