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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
130
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
130
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
74
histone
74
histone modification
38
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
236
bam
211
bigWig
131
tsv
89
bed narrowPeak
86
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
325
Homo sapiens
Biosample type
2392
tissue
638
cell line
468
primary cell
325
in vitro differentiated cells
8
stem cell
Organ
29
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
325
AMP
Genome assembly (visualization)
248
hg19
216
GRCh38
4
hg18
Lab
271
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
August, 2017
BIOSAMPLE
ASSAY
325 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
17
1
cardiac precursors (cardiac muscle cell)
19
1
1
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