Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
17
ATAC-seq
9
total RNA-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
62
DNA binding
18
DNA accessibility
9
Transcription
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
transcription factor
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
63
August, 2017
13
February, 2023
8
February, 2021
4
August, 2021
2
October, 2019
1
August, 2018
1
May, 2021
Available data
54
bam
52
bigWig
50
fastq
45
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
92
Homo sapiens
Biosample type
535
tissue
92
in vitro differentiated cells
38
primary cell
1
stem cell
Organ
92
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
92
AMP
Genome assembly (visualization)
68
hg19
49
GRCh38
Lab
88
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
92 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
62
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
See all biosamples
Download