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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
136
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
164
DNA binding
138
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
51
broad histone mark
48
narrow histone mark
32
control
32
transcription factor
11
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
54
August, 2017
40
August, 2021
37
February, 2018
26
February, 2021
25
December, 2017
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
268
bam
237
bigWig
131
tsv
118
fastq
115
bed narrowPeak
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
354
Homo sapiens
Biosample type
2554
tissue
1002
primary cell
625
cell line
354
in vitro differentiated cells
7
stem cell
Organ
77
connective tissue
23
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
354
AMP
Genome assembly (visualization)
258
hg19
232
GRCh38
4
hg18
Lab
302
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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