Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
70
ChIP-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
70
DNA binding
39
DNA accessibility
4
3D chromatin structure
Target of assay
histone
103
histone modification
52
broad histone mark
50
narrow histone mark
38
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
111
May, 2021
26
August, 2021
26
February, 2021
23
February, 2018
19
August, 2017
15
December, 2017
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
207
bam
176
bigWig
131
tsv
71
fastq
54
bed narrowPeak
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
260
Homo sapiens
Biosample type
1949
tissue
817
primary cell
609
cell line
260
in vitro differentiated cells
7
stem cell
Organ
42
connective tissue
16
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
260
AMP
Genome assembly (visualization)
198
hg19
171
GRCh38
4
hg18
Lab
228
AMP-T2D consortium
27
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
target.investigated_as!
histone
BIOSAMPLE
ASSAY
260 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
18
6
1
adipocyte
5
18
7
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
See all biosamples
Download