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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
134
total RNA-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
192
DNA binding
136
Transcription
43
DNA accessibility
2
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
63
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
283
bam
252
bigWig
135
fastq
132
bed narrowPeak
127
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
380
Homo sapiens
Biosample type
2711
tissue
1043
primary cell
638
cell line
380
in vitro differentiated cells
6
stem cell
Organ
92
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
380
AMP
Genome assembly (visualization)
286
hg19
258
GRCh38
4
hg18
Lab
326
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
March, 2020
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
62
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
pancreatic endoderm
17
4
1
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