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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
134
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
192
DNA binding
136
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
63
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
281
bam
250
bigWig
135
fastq
130
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
380
Homo sapiens
Biosample type
2509
tissue
1010
primary cell
619
cell line
380
in vitro differentiated cells
10
stem cell
Organ
90
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
380
AMP
Genome assembly (visualization)
284
hg19
256
GRCh38
4
hg18
Lab
326
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
62
5
6
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
17
4
1
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