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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
DNase-seq
Assay category
113
Transcription
82
DNA accessibility
7
DNA binding
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
127
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
5
April, 2019
3
December, 2019
2
October, 2019
1
June, 2019
Available data
65
bed narrowPeak
64
xls
62
txt
10
tsv
8
bam
5
csv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
Organism
207
Homo sapiens
Biosample type
207
tissue
11
primary cell
7
cell line
Organ
207
kidney
200
heart
121
brain
93
liver
92
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
160
AMP
47
KPMP
Genome assembly (visualization)
165
GRCh38
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
19
AMP-T2D consortium
Audit category:
7
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
207 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
DNase-seq
tissue
kidney
75
64
49
7
6
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
left kidney
1
renal glomerulus
1
See all biosamples
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