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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
136
total RNA-seq
40
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
178
DNA binding
138
Transcription
40
DNA accessibility
4
3D chromatin structure
Target of assay
99
histone
99
histone modification
49
broad histone mark
49
narrow histone mark
42
transcription factor
37
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
42
August, 2021
39
February, 2018
28
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
254
bigWig
135
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
371
Homo sapiens
Biosample type
2153
tissue
935
primary cell
371
in vitro differentiated cells
306
cell line
10
stem cell
Organ
89
connective tissue
28
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
371
AMP
Genome assembly (visualization)
275
hg19
245
GRCh38
4
hg18
Lab
317
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
371 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
62
5
6
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
17
4
1
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