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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
98
DNA binding
37
DNA accessibility
24
Transcription
2
DNA methylation
Target of assay
183
histone
183
histone modification
narrow histone mark
67
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
18
May, 2019
15
July, 2019
12
February, 2020
12
October, 2019
11
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
136
bam
114
bigWig
95
bed narrowPeak
92
bigBed narrowPeak
61
tagAlign
38
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
14
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
163
Homo sapiens
Biosample type
148
tissue
15
primary cell
Organ
844
pancreas
718
liver
633
connective tissue
467
adipose tissue
463
epithelium
353
heart
339
kidney
208
vasculature
203
blood vessel
163
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
163
AMP
Genome assembly (visualization)
108
GRCh38
67
hg19
Lab
163
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
hdf5
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
163 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
13
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 29 more…
primary cell
choroid plexus epithelial cell
2
1
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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