Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
172
DNA binding
89
Transcription
15
DNA methylation
11
DNA accessibility
Target of assay
109
histone modification
108
histone
59
broad histone mark
48
narrow histone mark
39
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
707
February, 2021
318
November, 2017
309
May, 2021
294
August, 2021
291
May, 2020
287
August, 2017
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
248
fastq
243
bam
233
bigWig
141
bed narrowPeak
89
tsv
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
287
Homo sapiens
Biosample type
203
tissue
49
in vitro differentiated cells
35
primary cell
Organ
150
pancreas
86
connective tissue
37
adipose tissue
34
liver
29
epithelium
11
musculature of body
Project
287
AMP
Genome assembly (visualization)
199
hg19
193
GRCh38
Lab
287
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
assay_title!
whole genome sequencing assay
BIOSAMPLE
ASSAY
287 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
23
89
1
1
liver
28
3
1
subcutaneous abdominal adipose tissue
28
3
skeletal muscle tissue
7
4
pancreas
7
+ See 3 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
See all biosamples
Download