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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
64
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
93
DNA binding
74
DNA accessibility
Target of assay
81
histone
81
histone modification
43
broad histone mark
38
narrow histone mark
12
transcription factor
8
RNA binding protein
Date released
40
October, 2018
36
August, 2017
31
November, 2019
18
May, 2022
14
September, 2018
7
October, 2019
5
September, 2017
4
June, 2019
4
October, 2017
3
March, 2020
3
November, 2018
1
May, 2019
1
May, 2021
Available data
635
bam
569
bigWig
417
fastq
417
tsv
181
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
21
bed broadPeak
19
bed bed3+
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
167
Homo sapiens
Biosample type
110
tissue
36
primary cell
21
cell line
Organ
390
liver
187
heart
183
kidney
167
pancreas
129
vasculature
125
blood vessel
125
epithelium
120
brain
92
limb
74
connective tissue
70
artery
54
blood
54
bodily fluid
47
musculature of body
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
vein
12
adipose tissue
8
bone element
8
skeleton
Project
163
AMP
4
T1D
Genome assembly (visualization)
165
hg19
147
GRCh38
Lab
149
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
9
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
13
37
1
1
body of pancreas
26
4
4
endocrine pancreas
14
pancreas
7
2
1
primary cell
pancreatic beta cell
7
7
pancreatic alpha cell
7
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
13
1
Panc1
6
1
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