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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
53
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
53
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
25
histone
25
histone modification
23
control
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
37
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
430
bam
413
bigWig
401
tsv
32
fastq
12
bed narrowPeak
10
bigBed narrowPeak
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
469
Homo sapiens
Biosample type
467
tissue
2
primary cell
1
in vitro differentiated cells
Organ
817
pancreas
692
liver
631
connective tissue
470
adipose tissue
444
epithelium
354
kidney
351
heart
195
vasculature
189
blood vessel
167
brain
151
bone element
122
limb
100
artery
81
musculature of body
69
blood
69
bodily fluid
43
nerve
36
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
470
AMP
Genome assembly (visualization)
412
GRCh38
412
hg19
Lab
470
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
month_released!
February, 2023
BIOSAMPLE
ASSAY
470 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
2
1
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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