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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
26
ATAC-seq
20
total RNA-seq
9
DNase-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
80
DNA binding
36
DNA accessibility
21
Transcription
7
DNA methylation
2
3D chromatin structure
Target of assay
62
transcription factor
22
RNA binding protein
15
recombinant protein
10
histone
10
histone modification
8
control
6
broad histone mark
5
chromatin remodeller
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
707
February, 2021
318
November, 2017
309
May, 2021
295
August, 2021
291
May, 2020
287
August, 2017
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
143
bam
109
bigWig
108
bed narrowPeak
85
fastq
71
bigBed narrowPeak
20
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
146
Homo sapiens
Biosample type
74
cell line
66
tissue
5
in vitro differentiated cells
1
primary cell
Organ
62
pancreas
50
liver
16
epithelium
15
blood
15
bodily fluid
9
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
146
AMP
Genome assembly (visualization)
134
GRCh38
128
hg19
Lab
146
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
146 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
cell line
HepG2
42
1
EndoC_BH1
13
1
1
1
GM12878
15
tissue
islet of Langerhans
19
19
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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