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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
18
total RNA-seq
12
ATAC-seq
1
GRO-seq
Assay category
21
DNA binding
18
Transcription
12
DNA accessibility
Target of assay
11
histone
11
histone modification
7
control
7
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
12
December, 2017
8
August, 2021
8
February, 2021
8
February, 2023
2
May, 2021
1
January, 2018
Available data
43
bam
29
bigWig
26
fastq
22
bed narrowPeak
14
tsv
4
bed bed3
4
txt
3
bed bed3+
Organism
52
Homo sapiens
Biosample type
28
in vitro differentiated cells
16
tissue
8
cell line
Organ
892
pancreas
778
liver
667
connective tissue
503
epithelium
479
adipose tissue
393
heart
290
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
41
hg19
37
GRCh38
1
hg18
Lab
52
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
xls
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
17
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
cell line
H1-hESC
8
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