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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
20
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
20
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
4
control
3
transcription factor
1
RNA binding protein
Date released
187
June, 2019
12
August, 2017
9
November, 2018
8
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
3019
bam
2789
bigWig
1597
bed narrowPeak
1469
tsv
1134
fastq
1010
bigBed narrowPeak
354
tagAlign
319
bed broadPeak
284
bigBed broadPeak
234
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
234
Homo sapiens
Biosample type
191
tissue
37
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
21
epithelium
19
pancreas
18
ureter
13
liver
13
vasculature
11
blood vessel
10
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
234
AMP
Genome assembly (visualization)
225
GRCh38
211
hg19
Lab
232
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
234 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 41 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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