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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
115
ChIP-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
133
Transcription
115
DNA binding
38
DNA accessibility
4
3D chromatin structure
Target of assay
65
histone
65
histone modification
32
broad histone mark
32
narrow histone mark
28
transcription factor
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
79
May, 2021
49
August, 2017
42
December, 2017
39
February, 2018
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
249
bigWig
135
fastq
132
bed narrowPeak
131
tsv
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
301
Homo sapiens
Biosample type
2465
tissue
789
primary cell
624
cell line
301
in vitro differentiated cells
10
stem cell
Organ
78
connective tissue
28
embryo
21
epithelium
15
liver
1
adipose tissue
1
heart
Project
301
AMP
Genome assembly (visualization)
270
hg19
242
GRCh38
4
hg18
Lab
294
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
301 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
48
8
1
1
cardiomyocytes
59
pancreatic endoderm
4
17
1
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
1
10
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