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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
89
single cell RNA-seq
37
snATAC-seq
10
ATAC-seq
6
WGBS
4
ChIP-seq
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
189
Transcription
47
DNA accessibility
6
DNA methylation
4
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
76
February, 2023
47
September, 2023
45
February, 2021
40
September, 2020
19
April, 2020
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
1
May, 2021
Available data
169
fastq
zippedFastqFolder
16
bigWig
8
tsv
6
bam
4
bed narrowPeak
4
hic
3
bedpe bed3+
3
cool
Organism
245
Homo sapiens
Biosample type
172
primary cell
70
tissue
6
cell line
2
stem cell
Organ
80
pancreas
76
epithelium
47
kidney
19
lung
Project
AMP
171
HPAP
47
KPMP
19
LungMap
8
T1D
4
community
1
ITG
Genome assembly (visualization)
17
GRCh38
9
hg19
Lab
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
4
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
files.file_type!
zippedFastqFolder
award.project!
AMP
BIOSAMPLE
ASSAY
250 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
chondrocytes
1
+ See 1 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
2
2
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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